Calprotectin (S100A8/A9) constitutes approximately 60% of the cytosolic protein content of neutrophils and serves as a marker of leukocyte activation and migration, providing valuable insight into the intensity and pattern of inflammation. This study aimed to evaluate the tissue expression and quantification of calprotectin in anorectal samples from patients with inflammatory bowel disease (IBD) using immunochemiluminescence and immunohistochemistry. Anti-calprotectin antibodies were conjugated with acridine ester for chemiluminescent detection and applied to tissue extracts. In parallel, indirect immunohistochemistry was performed on paraffin-embedded anorectal sections from patients with Crohn’s disease and ulcerative colitis, and from non-IBD controls. Quantitative and semiquantitative analyses were compared between groups. Calprotectin levels were significantly elevated in IBD tissues compared with controls (p < 0.05) in both detection methods. The chemiluminescent assay demonstrated higher analytical sensitivity, enabling quantification even in samples with mild histological inflammation. Increased tissue calprotectin reflects enhanced neutrophil infiltration and activation within the intestinal mucosa, corroborating its role as a local biomarker of inflammatory activity in IBD.